PBPK ontology

Title: PBPK ontology
URI: https://github.com/Crispae/pbpko/blob/main/Robot/ontologies/pbpko.owl
Version: 1.0

The following evaluation results have been generated by the RESTFul web service provided by OOPS! (OntOlogy Pitfall Scanner!).

It is obvious that not all the pitfalls are equally important; their impact in the ontology will depend on multiple factors. For this reason, each pitfall has an importance level attached indicating how important it is. We have identified three levels:

Critical: It is crucial to correct the pitfall. Otherwise, it could affect the ontology consistency, reasoning, applicability, etc.
Important: Though not critical for ontology function, it is important to correct this type of pitfall.
Minor: It is not really a problem, but by correcting it we will make the ontology nicer.

Evaluation results

P04. Creating unconnected ontology elements7 cases detected. Minor

Ontology elements (classes, object properties and datatype properties) are created isolated, with no relation to the rest of the ontology.

This pitfall affects to the following ontology elements:

P08. Missing annotations510 cases detected. Minor

This pitfall consists in creating an ontology element and failing to provide human readable annotations attached to it. Consequently, ontology elements lack annotation properties that label them (e.g. rdfs:label, lemon:LexicalEntry, skos:prefLabel or skos:altLabel) or that define them (e.g. rdfs:comment or dc:description). This pitfall is related to the guidelines provided in [5].

This pitfall affects to the following ontology elements:

P10. Missing disjointness ontology *Important

The ontology lacks disjoint axioms between classes or between properties that should be defined as disjoint. This pitfall is related with the guidelines provided in [6], [2] and [7].

*This pitfall applies to the ontology in general instead of specific elements

References:

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[4] Montiel-Ponsoda, E., Vila Suero, D., Villazón-Terrazas, B., Dunsire, G., Escolano Rodríguez, E., Gómez-Pérez, A. (2011). Style guidelines for naming and labeling ontologies in the multilingual web.
[5] Vrandecic, D. (2010). Ontology Evaluation. PhD thesis.
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[8] Hogan, A., Harth, A., Passant, A., Decker, S., and Polleres, A. (2010). Weaving the pedantic web. In Proceedings of the WWW2010 Workshop on Linked Data on the Web, LDOW 2010, Raleigh, USA, April 27, 2010.
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[10] Bernes-Lee Tim. (2006). “Linked Data - Design issues”. http://www.w3.org/DesignIssues/LinkedData.html
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[12] Vatant, B. (2012). Is your linked data vocabulary 5-star?. http://bvatant.blogspot.fr/2012/02/is-your-linked-data-vocabulary-5-star_9588.html